PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000371G0730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 680aa    MW: 75054 Da    PI: 6.1706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000371G0730genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind994.4e-311869103
                      HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                      +++d++++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+r+k 
  PH01000371G0730   1 MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTINRRKP 85 
                      899************99*****************************************999.........**********************97 PP

                      X CS
     HSF_DNA-bind 103 e 103
                      +
  PH01000371G0730  86 S 86 
                      5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-33183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-30183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-49183IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVDDPATDAV VSWGPGNNSF VVWNTPEFAR DLLPKYFKHS NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGQKHLLKTI NRRKPSHGSS QVQQQQPQLQ NAPIPACVEV GKFGMGEEME  120
MLKRDKNVLM QELVRLRQQQ QTTDHQLQTL GKRLQGMEQR QKQMMSFLAK AMQNPSFLAQ  180
FVQQNEKSRR RIVAANKKRR LPKQDGGLDS DSALLDGQII KYQPLINEAA KAMLRKILNL  240
DSSHTLESMG NSDNFLLENY MPTAQGFDSS SSTGNSGVTL AEVPPANSGM PYMATSSGLS  300
AICSSSTPPE IQCPVVLDNN SPKELPNTSA VPSVAKAVAP GPSDINLPEF PDFQDIVTED  360
AVNIPGGIFE MPGPEGVFPL PDEGDDTVPI ETDEILFNDD TQKLPAIIDS FWEQFLVASP  420
LSVDNDEVDS GLPDTRETQQ ENAWVKTENL ANLTEQMGLL SSNHIGLWHG WSIPAAVAKH  480
RNLTKLSAWL DGASLIVRII KSCWIKLYDA VKMSCLDELP MIELESIKHL GRASSYMHWV  540
LTNDGAGGVV LGQFDGGAEE AVVVLVGGAG VAVADVGRPM LASQRTGRSP RRTPWSEMNR  600
MDQRILSLPL SCKWGGISGG YEIFCEHMDI RDPATSLRNQ RRREIQAYMT SGGGGTGRRR  660
LGKSKTGRDD WATTRRTQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2318627123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652039.10.0PREDICTED: heat stress transcription factor A-1, partial
RefseqXP_015630421.10.0PREDICTED: heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0KLP90.0A0A0E0KLP9_ORYPU; Uncharacterized protein
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-104heat shock factor 3